J5_7B5K_001

3D structure

PDB id

7B5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7B5K|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7B5K_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0654

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7B5K|1|A|C|47
7B5K|1|A|G|48
7B5K|1|A|A|49
7B5K|1|A|U|50
7B5K|1|A|G|51
7B5K|1|A|A|52
7B5K|1|A|A|53
7B5K|1|A|G|54
*
7B5K|1|A|C|116
7B5K|1|A|G|117
7B5K|1|A|A|118
7B5K|1|A|A|119
7B5K|1|A|U|120
7B5K|1|A|G|121
*
7B5K|1|A|C|130
7B5K|1|A|A|131
*
7B5K|1|A|U|148
7B5K|1|A|A|149
7B5K|1|A|U|150
*
7B5K|1|A|A|176
7B5K|1|A|G|177
7B5K|1|A|G|178

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34