J5_7B7D_004

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAAU*AUG*CGAAU*AUGGUU

Length

46 nucleotides

Bulged bases

7B7D|1|2|U|128, 7B7D|1|2|U|132, 7B7D|1|2|U|134, 7B7D|1|2|A|135, 7B7D|1|2|A|140, 7B7D|1|2|U|141, 7B7D|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7B7D|1|2|A|124
7B7D|1|2|U|125
7B7D|1|2|A|126
7B7D|1|2|G|127
7B7D|1|2|U|128
7B7D|1|2|U|129
7B7D|1|2|C|130
7B7D|1|2|C|131
7B7D|1|2|U|132
7B7D|1|2|U|133
7B7D|1|2|U|134
7B7D|1|2|A|135
7B7D|1|2|C|136
7B7D|1|2|U|137
7B7D|1|2|A|138
7B7D|1|2|C|139
7B7D|1|2|A|140
7B7D|1|2|U|141
7B7D|1|2|G|142
7B7D|1|2|G|143
*
7B7D|1|2|C|172
7B7D|1|2|A|173
7B7D|1|2|U|174
7B7D|1|2|G|175
7B7D|1|2|C|176
7B7D|1|2|U|177
7B7D|1|2|U|178
7B7D|1|2|A|179
7B7D|1|2|A|180
7B7D|1|2|A|181
7B7D|1|2|A|182
7B7D|1|2|U|183
*
7B7D|1|2|A|202
7B7D|1|2|U|203
7B7D|1|2|G|204
*
7B7D|1|2|C|263
7B7D|1|2|G|264
7B7D|1|2|A|265
7B7D|1|2|A|266
7B7D|1|2|U|267
*
7B7D|1|2|A|288
7B7D|1|2|U|289
7B7D|1|2|G|290
7B7D|1|2|G|291
7B7D|1|2|U|292
7B7D|1|2|U|293

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain T

40S ribosomal protein S6-A

Chain V

40S ribosomal protein S8-A