J5_7B7D_006
3D structure
- PDB id
- 7B7D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 7B7D|1|LC|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7B7D_006 not in the Motif Atlas
- Homologous match to J5_8C3A_001
- Geometric discrepancy: 0.066
- The information below is about J5_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7B7D|1|LA|A|20
7B7D|1|LA|G|21
7B7D|1|LA|G|22
*
7B7D|1|LC|C|35
7B7D|1|LC|G|36
7B7D|1|LC|A|37
7B7D|1|LC|U|38
7B7D|1|LC|G|39
7B7D|1|LC|A|40
7B7D|1|LC|A|41
7B7D|1|LC|G|42
*
7B7D|1|LC|U|102
7B7D|1|LC|G|103
7B7D|1|LC|A|104
7B7D|1|LC|A|105
7B7D|1|LC|C|106
7B7D|1|LC|G|107
*
7B7D|1|LC|C|115
7B7D|1|LC|G|116
*
7B7D|1|LC|C|137
7B7D|1|LC|A|138
7B7D|1|LC|U|139
Current chains
- Chain LA
- 25S rRNA
- Chain LC
- 5.8S rRNA
Nearby chains
- Chain LP
- 60S ribosomal protein L15-A
- Chain LT
- 60S ribosomal protein L25
- Chain Ld
- 60S ribosomal protein L35-A
- Chain Lf
- 60S ribosomal protein L37-A
- Chain Lh
- 60S ribosomal protein L39
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