J5_7BL3_001

3D structure

PDB id

7BL3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S-ObgE particle state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7BL3|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7BL3_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1131

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7BL3|1|A|C|47
7BL3|1|A|G|48
7BL3|1|A|A|49
7BL3|1|A|U|50
7BL3|1|A|G|51
7BL3|1|A|A|52
7BL3|1|A|A|53
7BL3|1|A|G|54
*
7BL3|1|A|C|116
7BL3|1|A|G|117
7BL3|1|A|A|118
7BL3|1|A|A|119
7BL3|1|A|U|120
7BL3|1|A|G|121
*
7BL3|1|A|C|130
7BL3|1|A|A|131
*
7BL3|1|A|U|148
7BL3|1|A|A|149
7BL3|1|A|U|150
*
7BL3|1|A|A|176
7BL3|1|A|G|177
7BL3|1|A|G|178

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34