3D structure

PDB id
7BOD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacterial 30S ribosomal subunit assembly complex state M (body domain)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.88 Å

Loop

Sequence
CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG
Length
28 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7BOD_002 not in the Motif Atlas
Homologous match to J5_5J7L_002
Geometric discrepancy: 0.0448
The information below is about J5_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_67416.1
Basepair signature
cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
Number of instances in this motif group
1

Unit IDs

7BOD|1|A|C|36
7BOD|1|A|U|37
7BOD|1|A|G|38
7BOD|1|A|G|39
*
7BOD|1|A|C|403
7BOD|1|A|G|404
7BOD|1|A|U|405
7BOD|1|A|G|406
*
7BOD|1|A|C|436
7BOD|1|A|U|437
7BOD|1|A|U|438
7BOD|1|A|U|439
7BOD|1|A|C|440
7BOD|1|A|A|441
7BOD|1|A|G|442
*
7BOD|1|A|C|492
7BOD|1|A|A|493
7BOD|1|A|G|494
7BOD|1|A|A|495
7BOD|1|A|A|496
7BOD|1|A|G|497
7BOD|1|A|A|498
7BOD|1|A|A|499
7BOD|1|A|G|500
*
7BOD|1|A|C|545
7BOD|1|A|A|546
7BOD|1|A|A|547
7BOD|1|A|G|548

Current chains

Chain A
16S rRNA (body domain of 30S subunit)

Nearby chains

Chain D
30S ribosomal protein S4
Chain L
30S ribosomal protein S12

Coloring options:


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