J5_7BOI_002

3D structure

PDB id

7BOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state F (multibody refinement for body domain of 30S ribosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7BOI_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0547

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

7BOI|1|A|C|36
7BOI|1|A|U|37
7BOI|1|A|G|38
7BOI|1|A|G|39
*
7BOI|1|A|C|403
7BOI|1|A|G|404
7BOI|1|A|U|405
7BOI|1|A|G|406
*
7BOI|1|A|C|436
7BOI|1|A|U|437
7BOI|1|A|U|438
7BOI|1|A|U|439
7BOI|1|A|C|440
7BOI|1|A|A|441
7BOI|1|A|G|442
*
7BOI|1|A|C|492
7BOI|1|A|A|493
7BOI|1|A|G|494
7BOI|1|A|A|495
7BOI|1|A|A|496
7BOI|1|A|G|497
7BOI|1|A|A|498
7BOI|1|A|A|499
7BOI|1|A|G|500
*
7BOI|1|A|C|545
7BOI|1|A|A|546
7BOI|1|A|A|547
7BOI|1|A|G|548

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain L

30S ribosomal protein S12