J5_7BTB_005
3D structure
- PDB id
- 7BTB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUUUCUGCCCAGUGC*GUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCA*UGGAUUAAC
- Length
- 76 nucleotides
- Bulged bases
- 7BTB|1|1|U|2193, 7BTB|1|1|A|2243, 7BTB|1|1|A|2244, 7BTB|1|1|C|2248, 7BTB|1|1|A|2256, 7BTB|1|1|U|2269, 7BTB|1|1|G|2272, 7BTB|1|1|G|2273, 7BTB|1|1|U|2274, 7BTB|1|1|A|2275, 7BTB|1|1|G|2316, 7BTB|1|1|U|2318
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7BTB|1|1|G|2130
7BTB|1|1|A|2131
7BTB|1|1|C|2132
7BTB|1|1|U|2133
7BTB|1|1|G|2134
*
7BTB|1|1|C|2146
7BTB|1|1|A|2147
7BTB|1|1|U|2148
7BTB|1|1|A|2149
7BTB|1|1|G|2150
*
7BTB|1|1|U|2186
7BTB|1|1|G|2187
7BTB|1|1|A|2188
7BTB|1|1|U|2189
7BTB|1|1|U|2190
7BTB|1|1|U|2191
7BTB|1|1|C|2192
7BTB|1|1|U|2193
7BTB|1|1|G|2194
7BTB|1|1|C|2195
7BTB|1|1|C|2196
7BTB|1|1|C|2197
7BTB|1|1|A|2198
7BTB|1|1|G|2199
7BTB|1|1|U|2200
7BTB|1|1|G|2201
7BTB|1|1|C|2202
*
7BTB|1|1|G|2240
7BTB|1|1|U|2241
7BTB|1|1|A|2242
7BTB|1|1|A|2243
7BTB|1|1|A|2244
7BTB|1|1|C|2245
7BTB|1|1|G|2246
7BTB|1|1|G|2247
7BTB|1|1|C|2248
7BTB|1|1|G|2249
7BTB|1|1|G|2250
7BTB|1|1|G|2251
7BTB|1|1|A|2252
7BTB|1|1|G|2253
7BTB|1|1|U|2254
7BTB|1|1|A|2255
7BTB|1|1|A|2256
7BTB|1|1|C|2257
7BTB|1|1|U|2258
7BTB|1|1|A|2259
7BTB|1|1|U|2260
7BTB|1|1|G|2261
7BTB|1|1|A|2262
7BTB|1|1|C|2263
7BTB|1|1|U|2264
7BTB|1|1|C|2265
7BTB|1|1|U|2266
7BTB|1|1|C|2267
7BTB|1|1|U|2268
7BTB|1|1|U|2269
7BTB|1|1|A|2270
7BTB|1|1|A|2271
7BTB|1|1|G|2272
7BTB|1|1|G|2273
7BTB|1|1|U|2274
7BTB|1|1|A|2275
7BTB|1|1|G|2276
7BTB|1|1|C|2277
7BTB|1|1|C|2278
7BTB|1|1|A|2279
*
7BTB|1|1|U|2314
7BTB|1|1|G|2315
7BTB|1|1|G|2316
7BTB|1|1|A|2317
7BTB|1|1|U|2318
7BTB|1|1|U|2319
7BTB|1|1|A|2320
7BTB|1|1|A|2321
7BTB|1|1|C|2322
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain m
- Nucleolar GTP-binding protein 2
- Chain p
- 60S ribosomal protein L43-A
- Chain v
- Ribosome biogenesis protein RPF2
- Chain x
- Ribosome assembly protein 4
Coloring options: