J5_7BTB_009
3D structure
- PDB id
- 7BTB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- GAAAGAAGAC*GAUAACUGGCUUGUGG*CUUUUUGAUUCUUCGAUGUC*GGGUUUAG*UAGUUUUACC
- Length
- 64 nucleotides
- Bulged bases
- 7BTB|1|1|A|2397, 7BTB|1|1|U|2818, 7BTB|1|1|C|2821, 7BTB|1|1|G|2824, 7BTB|1|1|C|2825, 7BTB|1|1|G|2828, 7BTB|1|1|U|2829, 7BTB|1|1|U|2859, 7BTB|1|1|U|2860, 7BTB|1|1|U|2861, 7BTB|1|1|U|2862, 7BTB|1|1|G|2863, 7BTB|1|1|C|2867, 7BTB|1|1|U|2868, 7BTB|1|1|U|2869, 7BTB|1|1|C|2870, 7BTB|1|1|G|2871, 7BTB|1|1|A|2872, 7BTB|1|1|U|2954, 7BTB|1|1|U|2955, 7BTB|1|1|A|2956, 7BTB|1|1|U|2978, 7BTB|1|1|U|2979, 7BTB|1|1|U|2980, 7BTB|1|1|C|2983
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7BTB|1|1|G|2396
7BTB|1|1|A|2397
7BTB|1|1|A|2398
7BTB|1|1|A|2399
7BTB|1|1|G|2400
7BTB|1|1|A|2401
7BTB|1|1|A|2402
7BTB|1|1|G|2403
7BTB|1|1|A|2404
7BTB|1|1|C|2405
*
7BTB|1|1|G|2816
7BTB|1|1|A|2817
7BTB|1|1|U|2818
7BTB|1|1|A|2819
7BTB|1|1|A|2820
7BTB|1|1|C|2821
7BTB|1|1|U|2822
7BTB|1|1|G|2823
7BTB|1|1|G|2824
7BTB|1|1|C|2825
7BTB|1|1|U|2826
7BTB|1|1|U|2827
7BTB|1|1|G|2828
7BTB|1|1|U|2829
7BTB|1|1|G|2830
7BTB|1|1|G|2831
*
7BTB|1|1|C|2857
7BTB|1|1|U|2858
7BTB|1|1|U|2859
7BTB|1|1|U|2860
7BTB|1|1|U|2861
7BTB|1|1|U|2862
7BTB|1|1|G|2863
7BTB|1|1|A|2864
7BTB|1|1|U|2865
7BTB|1|1|U|2866
7BTB|1|1|C|2867
7BTB|1|1|U|2868
7BTB|1|1|U|2869
7BTB|1|1|C|2870
7BTB|1|1|G|2871
7BTB|1|1|A|2872
7BTB|1|1|U|2873
7BTB|1|1|G|2874
7BTB|1|1|U|2875
7BTB|1|1|C|2876
*
7BTB|1|1|G|2950
7BTB|1|1|G|2951
7BTB|1|1|G|2952
7BTB|1|1|U|2953
7BTB|1|1|U|2954
7BTB|1|1|U|2955
7BTB|1|1|A|2956
7BTB|1|1|G|2957
*
7BTB|1|1|U|2975
7BTB|1|1|A|2976
7BTB|1|1|G|2977
7BTB|1|1|U|2978
7BTB|1|1|U|2979
7BTB|1|1|U|2980
7BTB|1|1|U|2981
7BTB|1|1|A|2982
7BTB|1|1|C|2983
7BTB|1|1|C|2984
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain P
- 60S ribosomal protein L17-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain m
- Nucleolar GTP-binding protein 2
- Chain r
- Ribosome biogenesis protein NSA2
- Chain x
- Ribosome assembly protein 4
Coloring options: