J5_7BTB_010
3D structure
- PDB id
- 7BTB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- GCACAU*AUGUCCUAAG*UUGAU*AC*GGC
- Length
- 26 nucleotides
- Bulged bases
- 7BTB|1|1|C|2654, 7BTB|1|1|A|2656
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7BTB|1|1|G|2624
7BTB|1|1|C|2625
7BTB|1|1|A|2626
7BTB|1|1|C|2627
7BTB|1|1|A|2628
7BTB|1|1|U|2629
*
7BTB|1|1|A|2649
7BTB|1|1|U|2650
7BTB|1|1|G|2651
7BTB|1|1|U|2652
7BTB|1|1|C|2653
7BTB|1|1|C|2654
7BTB|1|1|U|2655
7BTB|1|1|A|2656
7BTB|1|1|A|2657
7BTB|1|1|G|2658
*
7BTB|1|1|U|2712
7BTB|1|1|U|2713
7BTB|1|1|G|2714
7BTB|1|1|A|2715
7BTB|1|1|U|2716
*
7BTB|1|1|A|2740
7BTB|1|1|C|2741
*
7BTB|1|1|G|2753
7BTB|1|1|G|2754
7BTB|1|1|C|2755
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain J
- 60S ribosomal protein L11-A
- Chain T
- 60S ribosomal protein L21-A
- Chain m
- Nucleolar GTP-binding protein 2
- Chain r
- Ribosome biogenesis protein NSA2
- Chain v
- Ribosome biogenesis protein RPF2
- Chain w
- Regulator of ribosome biosynthesis
- Chain x
- Ribosome assembly protein 4
Coloring options: