J5_7BV8_001

3D structure

PDB id

7BV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 50S ribosomal subunit from RrmJ knock out E.coli strain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7BV8|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7BV8_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0754

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7BV8|1|A|C|47
7BV8|1|A|G|48
7BV8|1|A|A|49
7BV8|1|A|U|50
7BV8|1|A|G|51
7BV8|1|A|A|52
7BV8|1|A|A|53
7BV8|1|A|G|54
*
7BV8|1|A|C|116
7BV8|1|A|G|117
7BV8|1|A|A|118
7BV8|1|A|A|119
7BV8|1|A|U|120
7BV8|1|A|G|121
*
7BV8|1|A|C|130
7BV8|1|A|A|131
*
7BV8|1|A|U|148
7BV8|1|A|A|149
7BV8|1|A|U|150
*
7BV8|1|A|A|176
7BV8|1|A|G|177
7BV8|1|A|G|178

Current chains

Chain A

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L34