J5_7BV8_005

3D structure

PDB id

7BV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 50S ribosomal subunit from RrmJ knock out E.coli strain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGUC*GUUUAG*CGGUCC

Length

36 nucleotides

Bulged bases

7BV8|1|A|A|2062, 7BV8|1|A|A|2448, 7BV8|1|A|U|2449, 7BV8|1|A|G|2505, 7BV8|1|A|U|2609, 7BV8|1|A|C|2610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7BV8|1|A|G|2057
7BV8|1|A|A|2058
7BV8|1|A|A|2059
7BV8|1|A|A|2060
7BV8|1|A|G|2061
7BV8|1|A|A|2062
7BV8|1|A|C|2063
7BV8|1|A|C|2064
*
7BV8|1|A|G|2446
7BV8|1|A|G|2447
7BV8|1|A|A|2448
7BV8|1|A|U|2449
7BV8|1|A|A|2450
7BV8|1|A|A|2451
7BV8|1|A|C|2452
7BV8|1|A|A|2453
*
7BV8|1|A|U|2500
7BV8|1|A|C|2501
7BV8|1|A|G|2502
7BV8|1|A|A|2503
7BV8|1|A|U|2504
7BV8|1|A|G|2505
7BV8|1|A|U|2506
7BV8|1|A|C|2507
*
7BV8|1|A|G|2583
7BV8|1|A|U|2584
7BV8|1|A|U|2585
7BV8|1|A|U|2586
7BV8|1|A|A|2587
7BV8|1|A|G|2588
*
7BV8|1|A|C|2606
7BV8|1|A|G|2607
7BV8|1|A|G|2608
7BV8|1|A|U|2609
7BV8|1|A|C|2610
7BV8|1|A|C|2611

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain D

50S ribosomal protein L3

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15

Chain N

50S ribosomal protein L16

Chain T

50S ribosomal protein L22

Chain b

50S ribosomal protein L32