J5_7CPJ_001

3D structure

PDB id

7CPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ycbZ-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7CPJ|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7CPJ_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0772

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7CPJ|1|A|C|47
7CPJ|1|A|G|48
7CPJ|1|A|A|49
7CPJ|1|A|U|50
7CPJ|1|A|G|51
7CPJ|1|A|A|52
7CPJ|1|A|A|53
7CPJ|1|A|G|54
*
7CPJ|1|A|C|116
7CPJ|1|A|G|117
7CPJ|1|A|A|118
7CPJ|1|A|A|119
7CPJ|1|A|U|120
7CPJ|1|A|G|121
*
7CPJ|1|A|C|130
7CPJ|1|A|A|131
*
7CPJ|1|A|U|148
7CPJ|1|A|A|149
7CPJ|1|A|U|150
*
7CPJ|1|A|A|176
7CPJ|1|A|G|177
7CPJ|1|A|G|178

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34