J5_7CPJ_005

3D structure

PDB id

7CPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ycbZ-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GU*GUUUAG*CGGUCC

Length

35 nucleotides

Bulged bases

7CPJ|1|A|A|2062, 7CPJ|1|A|A|2448, 7CPJ|1|A|H2U|2449, 7CPJ|1|A|U|2609

QA status

Modified nucleotides: H2U, 2MA, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPJ|1|A|G|2057
7CPJ|1|A|A|2058
7CPJ|1|A|A|2059
7CPJ|1|A|A|2060
7CPJ|1|A|G|2061
7CPJ|1|A|A|2062
7CPJ|1|A|C|2063
7CPJ|1|A|C|2064
*
7CPJ|1|A|G|2446
7CPJ|1|A|G|2447
7CPJ|1|A|A|2448
7CPJ|1|A|H2U|2449
7CPJ|1|A|A|2450
7CPJ|1|A|A|2451
7CPJ|1|A|C|2452
7CPJ|1|A|A|2453
*
7CPJ|1|A|U|2500
7CPJ|1|A|C|2501
7CPJ|1|A|G|2502
7CPJ|1|A|2MA|2503
7CPJ|1|A|PSU|2504
7CPJ|1|A|G|2505
7CPJ|1|A|U|2506
*
7CPJ|1|A|G|2583
7CPJ|1|A|U|2584
7CPJ|1|A|U|2585
7CPJ|1|A|U|2586
7CPJ|1|A|A|2587
7CPJ|1|A|G|2588
*
7CPJ|1|A|C|2606
7CPJ|1|A|G|2607
7CPJ|1|A|G|2608
7CPJ|1|A|U|2609
7CPJ|1|A|C|2610
7CPJ|1|A|C|2611

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain 9

Transfer RNA; tRNA

Chain C

50S ribosomal protein L2

Chain D

50S ribosomal protein L3

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L16

Chain S

50S ribosomal protein L22