J5_7CPV_002
3D structure
- PDB id
- 7CPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse testis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GCC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 7CPV|1|L5|C|2046, 7CPV|1|L5|U|2107
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7CPV_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0614
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
7CPV|1|L5|G|1150
7CPV|1|L5|G|1151
7CPV|1|L5|A|1152
7CPV|1|L5|G|1153
7CPV|1|L5|U|1154
7CPV|1|L5|C|1155
*
7CPV|1|L5|G|1330
7CPV|1|L5|G|1331
7CPV|1|L5|A|1332
7CPV|1|L5|C|1333
*
7CPV|1|L5|G|1472
7CPV|1|L5|U|1473
7CPV|1|L5|U|1474
7CPV|1|L5|C|1475
*
7CPV|1|L5|G|2045
7CPV|1|L5|C|2046
7CPV|1|L5|C|2047
*
7CPV|1|L5|G|2102
7CPV|1|L5|C|2103
7CPV|1|L5|A|2104
7CPV|1|L5|G|2105
7CPV|1|L5|A|2106
7CPV|1|L5|U|2107
7CPV|1|L5|C|2108
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- 60S ribosomal protein L4
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- 60S ribosomal protein L15
- Chain La
- 60S ribosomal protein L27a
- Chain Le
- 60S ribosomal protein L32
- Chain Lr
- 60S ribosomal protein L28
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