J5_7CPV_003
3D structure
- PDB id
- 7CPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse testis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 7CPV|1|L5|G|3277, 7CPV|1|L5|G|3282
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7CPV_003 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.109
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7CPV|1|L5|G|2609
7CPV|1|L5|C|2610
7CPV|1|L5|A|2611
7CPV|1|L5|A|2612
7CPV|1|L5|G|2613
7CPV|1|L5|C|2614
7CPV|1|L5|C|2615
7CPV|1|L5|G|2616
7CPV|1|L5|G|2617
*
7CPV|1|L5|U|2641
7CPV|1|L5|G|2642
*
7CPV|1|L5|U|3270
7CPV|1|L5|G|3271
*
7CPV|1|L5|C|3275
7CPV|1|L5|G|3276
7CPV|1|L5|G|3277
7CPV|1|L5|A|3278
7CPV|1|L5|C|3279
7CPV|1|L5|C|3280
7CPV|1|L5|A|3281
7CPV|1|L5|G|3282
7CPV|1|L5|G|3283
*
7CPV|1|L5|C|3492
7CPV|1|L5|A|3493
7CPV|1|L5|C|3494
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain LR
- 60S ribosomal protein L19
- Chain LV
- 60S ribosomal protein L23
- Chain LW
- 60S ribosomal protein L24
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SI
- 40S ribosomal protein S8
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