Loop J5_7CPV

3D structure

PDB id: 7CPV (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of 80S ribosome from mouse testis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å

Loop

Sequence: AAGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUUU
Length: 42 nucleotides
Bulged bases: 7CPV|1|L5|A|3565, 7CPV|1|L5|A|4047, 7CPV|1|L5|U|4103, 7CPV|1|L5|G|4104, 7CPV|1|L5|U|4208, 7CPV|1|L5|U|4209
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7CPV|1|L5|A|3559
7CPV|1|L5|A|3560
7CPV|1|L5|G|3561
7CPV|1|L5|A|3562
7CPV|1|L5|A|3563
7CPV|1|L5|G|3564
7CPV|1|L5|A|3565
7CPV|1|L5|C|3566
7CPV|1|L5|C|3567
*
7CPV|1|L5|G|4045
7CPV|1|L5|G|4046
7CPV|1|L5|A|4047
7CPV|1|L5|U|4048
7CPV|1|L5|A|4049
7CPV|1|L5|A|4050
7CPV|1|L5|C|4051
7CPV|1|L5|U|4052
7CPV|1|L5|G|4053
*
7CPV|1|L5|C|4097
7CPV|1|L5|U|4098
7CPV|1|L5|U|4099
7CPV|1|L5|C|4100
7CPV|1|L5|G|4101
7CPV|1|L5|A|4102
7CPV|1|L5|U|4103
7CPV|1|L5|G|4104
7CPV|1|L5|U|4105
7CPV|1|L5|C|4106
*
7CPV|1|L5|G|4181
7CPV|1|L5|G|4182
7CPV|1|L5|U|4183
7CPV|1|L5|U|4184
7CPV|1|L5|U|4185
7CPV|1|L5|A|4186
7CPV|1|L5|G|4187
*
7CPV|1|L5|U|4205
7CPV|1|L5|A|4206
7CPV|1|L5|G|4207
7CPV|1|L5|U|4208
7CPV|1|L5|U|4209
7CPV|1|L5|U|4210
7CPV|1|L5|U|4211

Current chains

Chain L5: Mus musculus 28S ribosomal RNA

Nearby chains

Chain LA: 60S ribosomal protein L8
Chain LB: 60S ribosomal protein L3
Chain LC: 60S ribosomal protein L4
Chain Lb: 60S ribosomal protein L29

J5_7CPV_004