J5_7CPV_008
3D structure
- PDB id
- 7CPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse testis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- CUUGU*AAAUAACA*UGGAAUGAG*CGAGGAUCCAU*AUAG
- Length
- 37 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7CPV|1|S2|C|30
7CPV|1|S2|U|31
7CPV|1|S2|U|32
7CPV|1|S2|G|33
7CPV|1|S2|U|34
*
7CPV|1|S2|A|522
7CPV|1|S2|A|523
7CPV|1|S2|A|524
7CPV|1|S2|U|525
7CPV|1|S2|A|526
7CPV|1|S2|A|527
7CPV|1|S2|C|528
7CPV|1|S2|A|529
*
7CPV|1|S2|U|558
7CPV|1|S2|G|559
7CPV|1|S2|G|560
7CPV|1|S2|A|561
7CPV|1|S2|A|562
7CPV|1|S2|U|563
7CPV|1|S2|G|564
7CPV|1|S2|A|565
7CPV|1|S2|G|566
*
7CPV|1|S2|C|586
7CPV|1|S2|G|587
7CPV|1|S2|A|588
7CPV|1|S2|G|589
7CPV|1|S2|G|590
7CPV|1|S2|A|591
7CPV|1|S2|U|592
7CPV|1|S2|C|593
7CPV|1|S2|C|594
7CPV|1|S2|A|595
7CPV|1|S2|U|596
*
7CPV|1|S2|A|642
7CPV|1|S2|U|643
7CPV|1|S2|A|644
7CPV|1|S2|G|645
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain SJ
- 40S ribosomal protein S9
- Chain SX
- 40S ribosomal protein S23
- Chain SY
- 40S ribosomal protein S24
- Chain Se
- 40S ribosomal protein S30
Coloring options: