J5_7D4I_001
3D structure
- PDB id
- 7D4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG
- Length
- 35 nucleotides
- Bulged bases
- 7D4I|1|SA|G|539
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7D4I|1|SA|C|31
7D4I|1|SA|U|32
7D4I|1|SA|U|33
7D4I|1|SA|G|34
7D4I|1|SA|U|35
*
7D4I|1|SA|A|473
7D4I|1|SA|A|474
7D4I|1|SA|A|475
7D4I|1|SA|U|476
7D4I|1|SA|A|477
7D4I|1|SA|A|478
7D4I|1|SA|C|479
*
7D4I|1|SA|G|509
7D4I|1|SA|G|510
7D4I|1|SA|A|511
7D4I|1|SA|A|512
7D4I|1|SA|U|513
7D4I|1|SA|G|514
7D4I|1|SA|A|515
7D4I|1|SA|G|516
*
7D4I|1|SA|C|536
7D4I|1|SA|G|537
7D4I|1|SA|A|538
7D4I|1|SA|G|539
7D4I|1|SA|G|540
7D4I|1|SA|A|541
7D4I|1|SA|A|542
7D4I|1|SA|C|543
7D4I|1|SA|A|544
7D4I|1|SA|A|545
7D4I|1|SA|U|546
*
7D4I|1|SA|A|592
7D4I|1|SA|U|593
7D4I|1|SA|A|594
7D4I|1|SA|G|595
Current chains
- Chain SA
- 18S rRNA
Nearby chains
- Chain 3F
- Ribosomal RNA-processing protein 9
- Chain 5H
- Something about silencing protein 10
- Chain RJ
- Ribosome biogenesis protein BMS1
- Chain SK
- 40S ribosomal protein S9-A
- Chain SY
- 40S ribosomal protein S23-A
Coloring options: