J5_7D4I_002
3D structure
- PDB id
- 7D4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU
- Length
- 41 nucleotides
- Bulged bases
- 7D4I|1|SA|G|127, 7D4I|1|SA|U|132, 7D4I|1|SA|U|133, 7D4I|1|SA|U|134, 7D4I|1|SA|A|135, 7D4I|1|SA|A|140, 7D4I|1|SA|U|141, 7D4I|1|SA|U|178, 7D4I|1|SA|A|179
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7D4I|1|SA|A|124
7D4I|1|SA|U|125
7D4I|1|SA|A|126
7D4I|1|SA|G|127
7D4I|1|SA|U|128
7D4I|1|SA|U|129
7D4I|1|SA|C|130
7D4I|1|SA|C|131
7D4I|1|SA|U|132
7D4I|1|SA|U|133
7D4I|1|SA|U|134
7D4I|1|SA|A|135
7D4I|1|SA|C|136
7D4I|1|SA|U|137
7D4I|1|SA|A|138
7D4I|1|SA|C|139
7D4I|1|SA|A|140
7D4I|1|SA|U|141
7D4I|1|SA|G|142
7D4I|1|SA|G|143
*
7D4I|1|SA|C|172
7D4I|1|SA|A|173
7D4I|1|SA|U|174
7D4I|1|SA|G|175
7D4I|1|SA|C|176
7D4I|1|SA|U|177
7D4I|1|SA|U|178
7D4I|1|SA|A|179
7D4I|1|SA|A|180
7D4I|1|SA|A|181
7D4I|1|SA|A|182
*
7D4I|1|SA|U|203
7D4I|1|SA|G|204
*
7D4I|1|SA|C|263
7D4I|1|SA|G|264
7D4I|1|SA|A|265
*
7D4I|1|SA|U|289
7D4I|1|SA|G|290
7D4I|1|SA|G|291
7D4I|1|SA|U|292
7D4I|1|SA|U|293
Current chains
- Chain SA
- 18S rRNA
Nearby chains
- Chain RP
- U3 small nucleolar RNA-associated protein 20
- Chain SF
- 40S ribosomal protein S4-A
- Chain SH
- 40S ribosomal protein S6-A
- Chain SJ
- 40S ribosomal protein S8-A
Coloring options: