J5_7D6Z_001

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7D6Z|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7D6Z_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0776

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7D6Z|1|A|C|47
7D6Z|1|A|G|48
7D6Z|1|A|A|49
7D6Z|1|A|U|50
7D6Z|1|A|G|51
7D6Z|1|A|A|52
7D6Z|1|A|A|53
7D6Z|1|A|G|54
*
7D6Z|1|A|C|116
7D6Z|1|A|G|117
7D6Z|1|A|A|118
7D6Z|1|A|A|119
7D6Z|1|A|U|120
7D6Z|1|A|G|121
*
7D6Z|1|A|C|130
7D6Z|1|A|A|131
*
7D6Z|1|A|U|148
7D6Z|1|A|A|149
7D6Z|1|A|U|150
*
7D6Z|1|A|A|176
7D6Z|1|A|G|177
7D6Z|1|A|G|178

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain c

50S ribosomal protein L34