J5_7D6Z_005
3D structure
- PDB id
- 7D6Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 7D6Z|1|A|A|2062, 7D6Z|1|A|A|2448, 7D6Z|1|A|U|2449, 7D6Z|1|A|U|2585, 7D6Z|1|A|U|2609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7D6Z|1|A|G|2057
7D6Z|1|A|A|2058
7D6Z|1|A|A|2059
7D6Z|1|A|A|2060
7D6Z|1|A|G|2061
7D6Z|1|A|A|2062
7D6Z|1|A|C|2063
7D6Z|1|A|C|2064
*
7D6Z|1|A|G|2446
7D6Z|1|A|G|2447
7D6Z|1|A|A|2448
7D6Z|1|A|U|2449
7D6Z|1|A|A|2450
7D6Z|1|A|A|2451
7D6Z|1|A|C|2452
7D6Z|1|A|A|2453
*
7D6Z|1|A|U|2500
7D6Z|1|A|C|2501
7D6Z|1|A|G|2502
7D6Z|1|A|A|2503
7D6Z|1|A|U|2504
7D6Z|1|A|G|2505
7D6Z|1|A|U|2506
7D6Z|1|A|C|2507
*
7D6Z|1|A|G|2582
7D6Z|1|A|G|2583
7D6Z|1|A|U|2584
7D6Z|1|A|U|2585
7D6Z|1|A|U|2586
7D6Z|1|A|A|2587
7D6Z|1|A|G|2588
*
7D6Z|1|A|C|2606
7D6Z|1|A|G|2607
7D6Z|1|A|G|2608
7D6Z|1|A|U|2609
7D6Z|1|A|C|2610
7D6Z|1|A|C|2611
Current chains
- Chain A
- 23S ribosomal rRNA
Nearby chains
- Chain 3
- Transfer RNA; tRNA
- Chain 4
- Transfer RNA; tRNA
- Chain C
- 50S ribosomal protein L2
- Chain D
- 50S ribosomal protein L3
- Chain E
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
- Chain M
- 50S ribosomal protein L16
- Chain S
- 50S ribosomal protein L22
- Chain a
- 50S ribosomal protein L32
Coloring options: