3D structure

PDB id
7D6Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CUGG*CGUGUAUGAAGAAG*UGUAAAGUACUUUC*GAAG*CAAG
Length
40 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7D6Z|1|f|C|36
7D6Z|1|f|U|37
7D6Z|1|f|G|38
7D6Z|1|f|G|39
*
7D6Z|1|f|C|403
7D6Z|1|f|G|404
7D6Z|1|f|U|405
7D6Z|1|f|G|406
7D6Z|1|f|U|407
7D6Z|1|f|A|408
7D6Z|1|f|U|409
7D6Z|1|f|G|410
7D6Z|1|f|A|411
7D6Z|1|f|A|412
7D6Z|1|f|G|413
7D6Z|1|f|A|414
7D6Z|1|f|A|415
7D6Z|1|f|G|416
*
7D6Z|1|f|U|427
7D6Z|1|f|G|428
7D6Z|1|f|U|429
7D6Z|1|f|A|430
7D6Z|1|f|A|431
7D6Z|1|f|A|432
7D6Z|1|f|G|433
7D6Z|1|f|U|434
7D6Z|1|f|A|435
7D6Z|1|f|C|436
7D6Z|1|f|U|437
7D6Z|1|f|U|438
7D6Z|1|f|U|439
7D6Z|1|f|C|440
*
7D6Z|1|f|G|497
7D6Z|1|f|A|498
7D6Z|1|f|A|499
7D6Z|1|f|G|500
*
7D6Z|1|f|C|545
7D6Z|1|f|A|546
7D6Z|1|f|A|547
7D6Z|1|f|G|548

Current chains

Chain f
16S ribosomal rRNA

Nearby chains

Chain k
30S ribosomal protein S4
Chain s
30S ribosomal protein S12

Coloring options:

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