J5_7F5S_004
3D structure
- PDB id
- 7F5S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human delta-METTL18 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- AGAAGA(OMC)C*(OMG)GAUAACUG*CUU(5MC)GA(PSU)GUC*GG(UR3)(PSU)(PSU)AG*(PSU)AGUUU
- Length
- 40 nucleotides
- Bulged bases
- 7F5S|1|L5|A|3908, 7F5S|1|L5|A|4394, 7F5S|1|L5|G|4451, 7F5S|1|L5|U|4555, 7F5S|1|L5|U|4556
- QA status
- Modified nucleotides: OMC, OMG, 5MC, PSU, UR3
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7F5S|1|L5|A|3903
7F5S|1|L5|G|3904
7F5S|1|L5|A|3905
7F5S|1|L5|A|3906
7F5S|1|L5|G|3907
7F5S|1|L5|A|3908
7F5S|1|L5|OMC|3909
7F5S|1|L5|C|3910
*
7F5S|1|L5|OMG|4392
7F5S|1|L5|G|4393
7F5S|1|L5|A|4394
7F5S|1|L5|U|4395
7F5S|1|L5|A|4396
7F5S|1|L5|A|4397
7F5S|1|L5|C|4398
7F5S|1|L5|U|4399
7F5S|1|L5|G|4400
*
7F5S|1|L5|C|4444
7F5S|1|L5|U|4445
7F5S|1|L5|U|4446
7F5S|1|L5|5MC|4447
7F5S|1|L5|G|4448
7F5S|1|L5|A|4449
7F5S|1|L5|PSU|4450
7F5S|1|L5|G|4451
7F5S|1|L5|U|4452
7F5S|1|L5|C|4453
*
7F5S|1|L5|G|4528
7F5S|1|L5|G|4529
7F5S|1|L5|UR3|4530
7F5S|1|L5|PSU|4531
7F5S|1|L5|PSU|4532
7F5S|1|L5|A|4533
7F5S|1|L5|G|4534
*
7F5S|1|L5|PSU|4552
7F5S|1|L5|A|4553
7F5S|1|L5|G|4554
7F5S|1|L5|U|4555
7F5S|1|L5|U|4556
7F5S|1|L5|U|4557
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LB
- 60S ribosomal protein L3
- Chain LC
- 60S ribosomal protein L4
- Chain LI
- 60S ribosomal protein L10
- Chain LP
- 60S ribosomal protein L17
- Chain La
- 60S ribosomal protein L27a
- Chain Lb
- 60S ribosomal protein L29
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