3D structure

PDB id
7F5S (explore in PDB, NAKB, or RNA 3D Hub)
Description
human delta-METTL18 60S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.72 Å

Loop

Sequence
AGAAGA(OMC)C*(OMG)GAUAACUG*CUU(5MC)GA(PSU)GUC*GG(UR3)(PSU)(PSU)AG*(PSU)AGUUU
Length
40 nucleotides
Bulged bases
7F5S|1|L5|A|3908, 7F5S|1|L5|A|4394, 7F5S|1|L5|G|4451, 7F5S|1|L5|U|4555, 7F5S|1|L5|U|4556
QA status
Modified nucleotides: OMC, OMG, 5MC, PSU, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7F5S|1|L5|A|3903
7F5S|1|L5|G|3904
7F5S|1|L5|A|3905
7F5S|1|L5|A|3906
7F5S|1|L5|G|3907
7F5S|1|L5|A|3908
7F5S|1|L5|OMC|3909
7F5S|1|L5|C|3910
*
7F5S|1|L5|OMG|4392
7F5S|1|L5|G|4393
7F5S|1|L5|A|4394
7F5S|1|L5|U|4395
7F5S|1|L5|A|4396
7F5S|1|L5|A|4397
7F5S|1|L5|C|4398
7F5S|1|L5|U|4399
7F5S|1|L5|G|4400
*
7F5S|1|L5|C|4444
7F5S|1|L5|U|4445
7F5S|1|L5|U|4446
7F5S|1|L5|5MC|4447
7F5S|1|L5|G|4448
7F5S|1|L5|A|4449
7F5S|1|L5|PSU|4450
7F5S|1|L5|G|4451
7F5S|1|L5|U|4452
7F5S|1|L5|C|4453
*
7F5S|1|L5|G|4528
7F5S|1|L5|G|4529
7F5S|1|L5|UR3|4530
7F5S|1|L5|PSU|4531
7F5S|1|L5|PSU|4532
7F5S|1|L5|A|4533
7F5S|1|L5|G|4534
*
7F5S|1|L5|PSU|4552
7F5S|1|L5|A|4553
7F5S|1|L5|G|4554
7F5S|1|L5|U|4555
7F5S|1|L5|U|4556
7F5S|1|L5|U|4557

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LA
60S ribosomal protein L8
Chain LB
60S ribosomal protein L3
Chain LC
60S ribosomal protein L4
Chain LI
60S ribosomal protein L10
Chain LP
60S ribosomal protein L17
Chain La
60S ribosomal protein L27a
Chain Lb
60S ribosomal protein L29

Coloring options:

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