J5_7JQC_002
3D structure
- PDB id
- 7JQC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUGAGUCCA*UUAACGAGGAUCCAU*AUAG
- Length
- 43 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7JQC|1|A|C|30
7JQC|1|A|U|31
7JQC|1|A|U|32
7JQC|1|A|G|33
7JQC|1|A|U|34
*
7JQC|1|A|A|521
7JQC|1|A|A|522
7JQC|1|A|A|523
7JQC|1|A|U|524
7JQC|1|A|A|525
7JQC|1|A|A|526
7JQC|1|A|C|527
*
7JQC|1|A|G|558
7JQC|1|A|G|559
7JQC|1|A|A|560
7JQC|1|A|A|561
7JQC|1|A|U|562
7JQC|1|A|G|563
7JQC|1|A|A|564
7JQC|1|A|G|565
7JQC|1|A|U|566
7JQC|1|A|C|567
7JQC|1|A|C|568
7JQC|1|A|A|569
*
7JQC|1|A|U|581
7JQC|1|A|U|582
7JQC|1|A|A|583
7JQC|1|A|A|584
7JQC|1|A|C|585
7JQC|1|A|G|586
7JQC|1|A|A|587
7JQC|1|A|G|588
7JQC|1|A|G|589
7JQC|1|A|A|590
7JQC|1|A|U|591
7JQC|1|A|C|592
7JQC|1|A|C|593
7JQC|1|A|A|594
7JQC|1|A|U|595
*
7JQC|1|A|A|641
7JQC|1|A|U|642
7JQC|1|A|A|643
7JQC|1|A|G|644
Current chains
- Chain A
- rRNA
Nearby chains
- Chain K
- uS4
- Chain Z
- 40S ribosomal protein S24
- Chain c
- Uncharacterized protein
- Chain f
- eS30
Coloring options: