J5_7JQC_003
3D structure
- PDB id
- 7JQC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CACAU*AAGGCAG
- Length
- 27 nucleotides
- Bulged bases
- 7JQC|1|A|U|55, 7JQC|1|A|A|92, 7JQC|1|A|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7JQC|1|A|C|53
7JQC|1|A|A|54
7JQC|1|A|U|55
7JQC|1|A|G|56
*
7JQC|1|A|C|89
7JQC|1|A|G|90
7JQC|1|A|A|91
7JQC|1|A|A|92
7JQC|1|A|U|93
7JQC|1|A|G|94
7JQC|1|A|G|95
7JQC|1|A|C|96
*
7JQC|1|A|G|434
7JQC|1|A|A|435
7JQC|1|A|G|436
*
7JQC|1|A|C|457
7JQC|1|A|A|458
7JQC|1|A|C|459
7JQC|1|A|A|460
7JQC|1|A|U|461
*
7JQC|1|A|A|468
7JQC|1|A|A|469
7JQC|1|A|G|470
7JQC|1|A|G|471
7JQC|1|A|C|472
7JQC|1|A|A|473
7JQC|1|A|G|474
Current chains
- Chain A
- rRNA
Nearby chains
- Chain H
- eS6
- Chain J
- eS8
- Chain K
- uS4
- Chain M
- 40S ribosomal protein S4
- Chain Z
- 40S ribosomal protein S24
Coloring options: