3D structure

PDB id
7JQL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CUGG*CUUG*CUGAACC*GGGUAAUAG*CGAG
Length
28 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7JQL_008 not in the Motif Atlas
Homologous match to J5_6CZR_007
Geometric discrepancy: 0.1072
The information below is about J5_6CZR_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7JQL|1|1a|C|36
7JQL|1|1a|U|37
7JQL|1|1a|G|38
7JQL|1|1a|G|39
*
7JQL|1|1a|C|403
7JQL|1|1a|U|404
7JQL|1|1a|U|405
7JQL|1|1a|G|406
*
7JQL|1|1a|C|436
7JQL|1|1a|U|437
7JQL|1|1a|G|438
7JQL|1|1a|A|439
7JQL|1|1a|A|441
7JQL|1|1a|C|442
7JQL|1|1a|C|443
*
7JQL|1|1a|G|491
7JQL|1|1a|G|492
7JQL|1|1a|G|493
7JQL|1|1a|U|494
7JQL|1|1a|A|495
7JQL|1|1a|A|496
7JQL|1|1a|U|498
7JQL|1|1a|A|499
7JQL|1|1a|G|500
*
7JQL|1|1a|C|545
7JQL|1|1a|G|546
7JQL|1|1a|A|547
7JQL|1|1a|G|548

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1d
30S ribosomal protein S4
Chain 1l
30S ribosomal protein S12

Coloring options:


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