J5_7JQM_018

3D structure

PDB id

7JQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-002, mRNA, and deacylated P-site tRNA at 3.05A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CUGG*CUUG*CUGAACC*GGGUAAUAG*CGAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7JQM_018 not in the Motif Atlas

Homologous match to J5_6CZR_007

Geometric discrepancy: 0.1207

The information below is about J5_6CZR_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7JQM|1|2a|C|36
7JQM|1|2a|U|37
7JQM|1|2a|G|38
7JQM|1|2a|G|39
*
7JQM|1|2a|C|403
7JQM|1|2a|U|404
7JQM|1|2a|U|405
7JQM|1|2a|G|406
*
7JQM|1|2a|C|436
7JQM|1|2a|U|437
7JQM|1|2a|G|438
7JQM|1|2a|A|439
7JQM|1|2a|A|441
7JQM|1|2a|C|442
7JQM|1|2a|C|443
*
7JQM|1|2a|G|491
7JQM|1|2a|G|492
7JQM|1|2a|G|493
7JQM|1|2a|U|494
7JQM|1|2a|A|495
7JQM|1|2a|A|496
7JQM|1|2a|U|498
7JQM|1|2a|A|499
7JQM|1|2a|G|500
*
7JQM|1|2a|C|545
7JQM|1|2a|G|546
7JQM|1|2a|A|547
7JQM|1|2a|G|548

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12