J5_7JSS_001

3D structure

PDB id

7JSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7JSS|1|1|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7JSS_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1315

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7JSS|1|1|C|47
7JSS|1|1|G|48
7JSS|1|1|A|49
7JSS|1|1|U|50
7JSS|1|1|G|51
7JSS|1|1|A|52
7JSS|1|1|A|53
7JSS|1|1|G|54
*
7JSS|1|1|C|116
7JSS|1|1|G|117
7JSS|1|1|A|118
7JSS|1|1|A|119
7JSS|1|1|U|120
7JSS|1|1|G|121
*
7JSS|1|1|C|130
7JSS|1|1|A|131
*
7JSS|1|1|U|148
7JSS|1|1|A|149
7JSS|1|1|U|150
*
7JSS|1|1|A|176
7JSS|1|1|G|177
7JSS|1|1|G|178

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34