J5_7JSZ_001

3D structure

PDB id

7JSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7JSZ|1|1|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7JSZ_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1346

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7JSZ|1|1|C|47
7JSZ|1|1|G|48
7JSZ|1|1|A|49
7JSZ|1|1|U|50
7JSZ|1|1|G|51
7JSZ|1|1|A|52
7JSZ|1|1|A|53
7JSZ|1|1|G|54
*
7JSZ|1|1|C|116
7JSZ|1|1|G|117
7JSZ|1|1|A|118
7JSZ|1|1|A|119
7JSZ|1|1|U|120
7JSZ|1|1|G|121
*
7JSZ|1|1|C|130
7JSZ|1|1|A|131
*
7JSZ|1|1|U|148
7JSZ|1|1|A|149
7JSZ|1|1|U|150
*
7JSZ|1|1|A|176
7JSZ|1|1|G|177
7JSZ|1|1|G|178

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34