J5_7JT1_001

3D structure

PDB id

7JT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound (+9-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7JT1|1|1|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7JT1_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1032

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7JT1|1|1|C|47
7JT1|1|1|G|48
7JT1|1|1|A|49
7JT1|1|1|U|50
7JT1|1|1|G|51
7JT1|1|1|A|52
7JT1|1|1|A|53
7JT1|1|1|G|54
*
7JT1|1|1|C|116
7JT1|1|1|G|117
7JT1|1|1|A|118
7JT1|1|1|A|119
7JT1|1|1|U|120
7JT1|1|1|G|121
*
7JT1|1|1|C|130
7JT1|1|1|A|131
*
7JT1|1|1|U|148
7JT1|1|1|A|149
7JT1|1|1|U|150
*
7JT1|1|1|A|176
7JT1|1|1|G|177
7JT1|1|1|G|178

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34