J5_7JT2_001

3D structure

PDB id

7JT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB bound in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7JT2|1|1|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7JT2_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1203

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7JT2|1|1|C|47
7JT2|1|1|G|48
7JT2|1|1|A|49
7JT2|1|1|U|50
7JT2|1|1|G|51
7JT2|1|1|A|52
7JT2|1|1|A|53
7JT2|1|1|G|54
*
7JT2|1|1|C|116
7JT2|1|1|G|117
7JT2|1|1|A|118
7JT2|1|1|A|119
7JT2|1|1|U|120
7JT2|1|1|G|121
*
7JT2|1|1|C|130
7JT2|1|1|A|131
*
7JT2|1|1|U|148
7JT2|1|1|A|149
7JT2|1|1|U|150
*
7JT2|1|1|A|176
7JT2|1|1|G|177
7JT2|1|1|G|178

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34