J5_7K00_004

3D structure

PDB id

7K00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome at 2 Angstrom Resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7K00|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7K00_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0474

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7K00|1|a|C|47
7K00|1|a|G|48
7K00|1|a|A|49
7K00|1|a|U|50
7K00|1|a|G|51
7K00|1|a|A|52
7K00|1|a|A|53
7K00|1|a|G|54
*
7K00|1|a|C|116
7K00|1|a|G|117
7K00|1|a|A|118
7K00|1|a|A|119
7K00|1|a|U|120
7K00|1|a|G|121
*
7K00|1|a|C|130
7K00|1|a|A|131
*
7K00|1|a|U|148
7K00|1|a|A|149
7K00|1|a|U|150
*
7K00|1|a|A|176
7K00|1|a|G|177
7K00|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34