J5_7K54_001

3D structure

PDB id

7K54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7K54|1|1|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7K54_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1216

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7K54|1|1|C|47
7K54|1|1|G|48
7K54|1|1|A|49
7K54|1|1|U|50
7K54|1|1|G|51
7K54|1|1|A|52
7K54|1|1|A|53
7K54|1|1|G|54
*
7K54|1|1|C|116
7K54|1|1|G|117
7K54|1|1|A|118
7K54|1|1|A|119
7K54|1|1|U|120
7K54|1|1|G|121
*
7K54|1|1|C|130
7K54|1|1|A|131
*
7K54|1|1|U|148
7K54|1|1|A|149
7K54|1|1|U|150
*
7K54|1|1|A|176
7K54|1|1|G|177
7K54|1|1|G|178

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34