J5_7K5I_004

3D structure

PDB id

7K5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-COV-2 nsp1 in complex with human 40S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCGCUCG*CGGG*UG*CCG*CGA

Length

19 nucleotides

Bulged bases

7K5I|1|2|G|126, 7K5I|1|2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7K5I|1|2|U|124
7K5I|1|2|C|125
7K5I|1|2|G|126
7K5I|1|2|C|127
7K5I|1|2|U|128
7K5I|1|2|C|129
7K5I|1|2|G|130
*
7K5I|1|2|C|182
7K5I|1|2|G|183
7K5I|1|2|G|184
7K5I|1|2|G|185
*
7K5I|1|2|U|214
7K5I|1|2|G|215
*
7K5I|1|2|C|310
7K5I|1|2|C|311
7K5I|1|2|G|312
*
7K5I|1|2|C|337
7K5I|1|2|G|338
7K5I|1|2|A|339

Current chains

Chain 2

40S ribosomal rRNA18S

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain G

40S ribosomal protein S6

Chain I

40S ribosomal protein S8