J5_7LH5_012

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

CUAAAC*GGGUCGG*CGAGUAC*GGAAUCUG*UAAG

Length

32 nucleotides

Bulged bases

7LH5|1|DA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7LH5|1|DA|C|268
7LH5|1|DA|U|269
7LH5|1|DA|A|270
7LH5|1|DA|A|271
7LH5|1|DA|A|271|||A
7LH5|1|DA|C|271|||B
*
7LH5|1|DA|G|271|||V
7LH5|1|DA|G|271|||W
7LH5|1|DA|G|271|||X
7LH5|1|DA|U|271|||Y
7LH5|1|DA|C|271|||Z
7LH5|1|DA|G|272
7LH5|1|DA|G|272|||B
*
7LH5|1|DA|C|366
7LH5|1|DA|G|370
7LH5|1|DA|A|371
7LH5|1|DA|G|372
7LH5|1|DA|U|373
7LH5|1|DA|A|374
7LH5|1|DA|C|375
*
7LH5|1|DA|G|399
7LH5|1|DA|G|400
7LH5|1|DA|A|401
7LH5|1|DA|A|402
7LH5|1|DA|U|403
7LH5|1|DA|C|404
7LH5|1|DA|U|405
7LH5|1|DA|G|406
*
7LH5|1|DA|U|421
7LH5|1|DA|A|422
7LH5|1|DA|A|423
7LH5|1|DA|G|424

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L28

Chain DI

50S ribosomal protein L9