J5_7LS1_001
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUG*CGAUGAAG*CGAACG*CG*UAC
- Length
- 22 nucleotides
- Bulged bases
- 7LS1|1|C2|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7LS1_001 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.1306
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.2
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
7LS1|1|A2|G|19
7LS1|1|A2|U|20
7LS1|1|A2|G|21
*
7LS1|1|C2|C|35
7LS1|1|C2|G|36
7LS1|1|C2|A|37
7LS1|1|C2|U|38
7LS1|1|C2|G|39
7LS1|1|C2|A|40
7LS1|1|C2|A|41
7LS1|1|C2|G|42
*
7LS1|1|C2|C|101
7LS1|1|C2|G|102
7LS1|1|C2|A|103
7LS1|1|C2|A|104
7LS1|1|C2|C|105
7LS1|1|C2|G|106
*
7LS1|1|C2|C|113
7LS1|1|C2|G|114
*
7LS1|1|C2|U|136
7LS1|1|C2|A|137
7LS1|1|C2|C|138
Current chains
- Chain A2
- 28S rRNA
- Chain C2
- 5.8S rRNA
Nearby chains
- Chain H1
- 60S ribosomal protein L15
- Chain R2
- 60S ribosomal protein L23a
- Chain b2
- 60S ribosomal protein L35
- Chain d2
- 60S ribosomal protein L37
- Chain f2
- 60S ribosomal protein L39
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