J5_7LS1_003
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 7LS1|1|A2|G|3276, 7LS1|1|A2|G|3281
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7LS1_003 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1543
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7LS1|1|A2|G|2610
7LS1|1|A2|C|2611
7LS1|1|A2|A|2612
7LS1|1|A2|A|2613
7LS1|1|A2|G|2614
7LS1|1|A2|C|2615
7LS1|1|A2|OMC|2616
7LS1|1|A2|G|2617
7LS1|1|A2|G|2618
*
7LS1|1|A2|U|2642
7LS1|1|A2|G|2643
*
7LS1|1|A2|U|3269
7LS1|1|A2|G|3270
*
7LS1|1|A2|C|3274
7LS1|1|A2|G|3275
7LS1|1|A2|G|3276
7LS1|1|A2|A|3277
7LS1|1|A2|C|3278
7LS1|1|A2|C|3279
7LS1|1|A2|A|3280
7LS1|1|A2|G|3281
7LS1|1|A2|G|3282
*
7LS1|1|A2|C|3491
7LS1|1|A2|A|3492
7LS1|1|A2|C|3493
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain E2
- 60S ribosomal protein L3
- Chain L2
- 60S ribosomal protein L19
- Chain P2
- 60S ribosomal protein L23
- Chain Q2
- 60S ribosomal protein L24
- Chain m2
- Small subunit ribosomal RNA; SSU rRNA
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