J5_7LS1_004

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAAGA(OMC)C*GGAUAACUG*CUU(5MC)GA(PSU)GUC*GGU(PSU)UAG*UAGUUU

Length

40 nucleotides

Bulged bases

7LS1|1|A2|A|3564, 7LS1|1|A2|A|4046, 7LS1|1|A2|G|4103, 7LS1|1|A2|U|4207, 7LS1|1|A2|U|4208

QA status

Modified nucleotides: OMC, 5MC, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7LS1|1|A2|A|3559
7LS1|1|A2|G|3560
7LS1|1|A2|A|3561
7LS1|1|A2|A|3562
7LS1|1|A2|G|3563
7LS1|1|A2|A|3564
7LS1|1|A2|OMC|3565
7LS1|1|A2|C|3566
*
7LS1|1|A2|G|4044
7LS1|1|A2|G|4045
7LS1|1|A2|A|4046
7LS1|1|A2|U|4047
7LS1|1|A2|A|4048
7LS1|1|A2|A|4049
7LS1|1|A2|C|4050
7LS1|1|A2|U|4051
7LS1|1|A2|G|4052
*
7LS1|1|A2|C|4096
7LS1|1|A2|U|4097
7LS1|1|A2|U|4098
7LS1|1|A2|5MC|4099
7LS1|1|A2|G|4100
7LS1|1|A2|A|4101
7LS1|1|A2|PSU|4102
7LS1|1|A2|G|4103
7LS1|1|A2|U|4104
7LS1|1|A2|C|4105
*
7LS1|1|A2|G|4180
7LS1|1|A2|G|4181
7LS1|1|A2|U|4182
7LS1|1|A2|PSU|4183
7LS1|1|A2|U|4184
7LS1|1|A2|A|4185
7LS1|1|A2|G|4186
*
7LS1|1|A2|U|4204
7LS1|1|A2|A|4205
7LS1|1|A2|G|4206
7LS1|1|A2|U|4207
7LS1|1|A2|U|4208
7LS1|1|A2|U|4209

Current chains

Chain A2

28S rRNA

Nearby chains

Chain D2

60S ribosomal protein L8

Chain E2

60S ribosomal protein L3

Chain F2

60S ribosomal protein L4

Chain U2

60S ribosomal protein L27a

Chain V2

60S ribosomal protein L29