Loop J5_7LS1

3D structure

PDB id: 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
Description: 80S ribosome from mouse bound to eEF2 (Class II)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å

Loop

Sequence: UGCUUGUCUCAAA*UGA(OMC)GAAAAAUAAC*GGAAUG*CCAU*AUA(OMG)CG
Length: 43 nucleotides
Bulged bases: 7LS1|1|m2|U|32, 7LS1|1|m2|A|518, 7LS1|1|m2|C|595
QA status: Modified nucleotides: OMC, OMG

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7LS1|1|m2|U|28
7LS1|1|m2|G|29
7LS1|1|m2|C|30
7LS1|1|m2|U|31
7LS1|1|m2|U|32
7LS1|1|m2|G|33
7LS1|1|m2|U|34
7LS1|1|m2|C|35
7LS1|1|m2|U|36
7LS1|1|m2|C|37
7LS1|1|m2|A|38
7LS1|1|m2|A|39
7LS1|1|m2|A|40
*
7LS1|1|m2|U|516
7LS1|1|m2|G|517
7LS1|1|m2|A|518
7LS1|1|m2|OMC|519
7LS1|1|m2|G|520
7LS1|1|m2|A|521
7LS1|1|m2|A|522
7LS1|1|m2|A|523
7LS1|1|m2|A|524
7LS1|1|m2|A|525
7LS1|1|m2|U|526
7LS1|1|m2|A|527
7LS1|1|m2|A|528
7LS1|1|m2|C|529
*
7LS1|1|m2|G|560
7LS1|1|m2|G|561
7LS1|1|m2|A|562
7LS1|1|m2|A|563
7LS1|1|m2|U|564
7LS1|1|m2|G|565
*
7LS1|1|m2|C|594
7LS1|1|m2|C|595
7LS1|1|m2|A|596
7LS1|1|m2|U|597
*
7LS1|1|m2|A|643
7LS1|1|m2|U|644
7LS1|1|m2|A|645
7LS1|1|m2|OMG|646
7LS1|1|m2|C|647
7LS1|1|m2|G|648

Current chains

Chain m2: 28S rRNA

Nearby chains

Chain E3: 40S ribosomal protein S23
Chain L3: 40S ribosomal protein S9
Chain T3: 40S ribosomal protein S30
Chain r2: 40S ribosomal protein S4, X isoform

J5_7LS1_006