J5_7LS1_008
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAUGUCUAAGUACGCAC*GUGAAACUGCGAAUGGCUC*GAGAG*CAC*GGCAG
- Length
- 49 nucleotides
- Bulged bases
- 7LS1|1|m2|U|59, 7LS1|1|m2|C|65, 7LS1|1|m2|C|67, 7LS1|1|m2|A|92, 7LS1|1|m2|C|474
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7LS1|1|m2|C|53
7LS1|1|m2|A|54
7LS1|1|m2|U|55
7LS1|1|m2|G|56
7LS1|1|m2|U|57
7LS1|1|m2|C|58
7LS1|1|m2|U|59
7LS1|1|m2|A|60
7LS1|1|m2|A|61
7LS1|1|m2|G|62
7LS1|1|m2|U|63
7LS1|1|m2|A|64
7LS1|1|m2|C|65
7LS1|1|m2|G|66
7LS1|1|m2|C|67
7LS1|1|m2|A|68
7LS1|1|m2|C|69
*
7LS1|1|m2|G|80
7LS1|1|m2|U|81
7LS1|1|m2|G|82
7LS1|1|m2|A|83
7LS1|1|m2|A|84
7LS1|1|m2|A|85
7LS1|1|m2|C|86
7LS1|1|m2|U|87
7LS1|1|m2|G|88
7LS1|1|m2|C|89
7LS1|1|m2|G|90
7LS1|1|m2|A|91
7LS1|1|m2|A|92
7LS1|1|m2|U|93
7LS1|1|m2|G|94
7LS1|1|m2|G|95
7LS1|1|m2|C|96
7LS1|1|m2|U|97
7LS1|1|m2|C|98
*
7LS1|1|m2|G|434
7LS1|1|m2|A|435
7LS1|1|m2|G|436
7LS1|1|m2|A|437
7LS1|1|m2|G|438
*
7LS1|1|m2|C|459
7LS1|1|m2|A|460
7LS1|1|m2|C|461
*
7LS1|1|m2|G|472
7LS1|1|m2|G|473
7LS1|1|m2|C|474
7LS1|1|m2|A|475
7LS1|1|m2|G|476
Current chains
- Chain m2
- 28S rRNA
Nearby chains
- Chain K3
- 40S ribosomal protein S6
- Chain L3
- 40S ribosomal protein S9
- Chain P2
- 60S ribosomal protein L23
- Chain Q2
- 60S ribosomal protein L24
- Chain Q3
- 40S ribosomal protein S24
- Chain r2
- 40S ribosomal protein S4, X isoform
- Chain u
- 40S ribosomal protein S8
Coloring options: