J5_7LVK_001

3D structure

PDB id

7LVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified 50S subunit from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7LVK|1|I|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7LVK_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0525

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7LVK|1|I|C|47
7LVK|1|I|G|48
7LVK|1|I|A|49
7LVK|1|I|U|50
7LVK|1|I|G|51
7LVK|1|I|A|52
7LVK|1|I|A|53
7LVK|1|I|G|54
*
7LVK|1|I|C|116
7LVK|1|I|G|117
7LVK|1|I|A|118
7LVK|1|I|A|119
7LVK|1|I|U|120
7LVK|1|I|G|121
*
7LVK|1|I|C|130
7LVK|1|I|A|131
*
7LVK|1|I|U|148
7LVK|1|I|A|149
7LVK|1|I|U|150
*
7LVK|1|I|A|176
7LVK|1|I|G|177
7LVK|1|I|G|178

Current chains

Chain I

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L34