3D structure

PDB id
7LVK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cfr-modified 50S subunit from Escherichia coli
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
GAAAGACC*GGAUAACA*UCG(8AH)(PSU)GUC*GGUUUAG*CGGUCC
Length
37 nucleotides
Bulged bases
7LVK|1|I|A|2062, 7LVK|1|I|A|2448, 7LVK|1|I|U|2449, 7LVK|1|I|U|2506, 7LVK|1|I|U|2585, 7LVK|1|I|U|2609
QA status
Modified nucleotides: 8AH, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7LVK|1|I|G|2057
7LVK|1|I|A|2058
7LVK|1|I|A|2059
7LVK|1|I|A|2060
7LVK|1|I|G|2061
7LVK|1|I|A|2062
7LVK|1|I|C|2063
7LVK|1|I|C|2064
*
7LVK|1|I|G|2446
7LVK|1|I|G|2447
7LVK|1|I|A|2448
7LVK|1|I|U|2449
7LVK|1|I|A|2450
7LVK|1|I|A|2451
7LVK|1|I|C|2452
7LVK|1|I|A|2453
*
7LVK|1|I|U|2500
7LVK|1|I|C|2501
7LVK|1|I|G|2502
7LVK|1|I|8AH|2503
7LVK|1|I|PSU|2504
7LVK|1|I|G|2505
7LVK|1|I|U|2506
7LVK|1|I|C|2507
*
7LVK|1|I|G|2582
7LVK|1|I|G|2583
7LVK|1|I|U|2584
7LVK|1|I|U|2585
7LVK|1|I|U|2586
7LVK|1|I|A|2587
7LVK|1|I|G|2588
*
7LVK|1|I|C|2606
7LVK|1|I|G|2607
7LVK|1|I|G|2608
7LVK|1|I|U|2609
7LVK|1|I|C|2610
7LVK|1|I|C|2611

Current chains

Chain I
23S rRNA

Nearby chains

Chain K
50S ribosomal protein L2
Chain L
50S ribosomal protein L3
Chain M
50S ribosomal protein L4
Chain T
50S ribosomal protein L15
Chain U
50S ribosomal protein L16
Chain a
50S ribosomal protein L22
Chain i
50S ribosomal protein L32

Coloring options:

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