J5_7M4V_005

3D structure

PDB id

7M4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC

Length

37 nucleotides

Bulged bases

7M4V|1|A|A|2444, 7M4V|1|A|U|2445, 7M4V|1|A|U|2581, 7M4V|1|A|U|2605

QA status

Modified nucleotides: 2MA, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7M4V|1|A|G|2053
7M4V|1|A|A|2054
7M4V|1|A|A|2055
7M4V|1|A|A|2056
7M4V|1|A|G|2057
7M4V|1|A|A|2058
7M4V|1|A|C|2059
7M4V|1|A|C|2060
*
7M4V|1|A|G|2442
7M4V|1|A|G|2443
7M4V|1|A|A|2444
7M4V|1|A|U|2445
7M4V|1|A|A|2446
7M4V|1|A|A|2447
7M4V|1|A|C|2448
7M4V|1|A|A|2449
*
7M4V|1|A|U|2496
7M4V|1|A|C|2497
7M4V|1|A|G|2498
7M4V|1|A|2MA|2499
7M4V|1|A|PSU|2500
7M4V|1|A|G|2501
7M4V|1|A|U|2502
7M4V|1|A|C|2503
*
7M4V|1|A|G|2578
7M4V|1|A|G|2579
7M4V|1|A|U|2580
7M4V|1|A|U|2581
7M4V|1|A|U|2582
7M4V|1|A|A|2583
7M4V|1|A|G|2584
*
7M4V|1|A|C|2602
7M4V|1|A|G|2603
7M4V|1|A|G|2604
7M4V|1|A|U|2605
7M4V|1|A|C|2606
7M4V|1|A|C|2607

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain D

50S ribosomal protein L3

Chain E

50S ribosomal protein L4

Chain K

50S ribosomal protein L15

Chain L

50S ribosomal protein L16

Chain R

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32