J5_7M4W_001

3D structure

PDB id

7M4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S Empty

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CGAUGAAA*UGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7M4W|1|A|U|57

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7M4W_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0916

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7M4W|1|A|C|54
7M4W|1|A|G|55
7M4W|1|A|A|56
7M4W|1|A|U|57
7M4W|1|A|G|58
7M4W|1|A|A|59
7M4W|1|A|A|60
7M4W|1|A|A|61
*
7M4W|1|A|U|123
7M4W|1|A|G|124
7M4W|1|A|A|125
7M4W|1|A|A|126
7M4W|1|A|U|127
7M4W|1|A|G|128
*
7M4W|1|A|C|137
7M4W|1|A|A|138
*
7M4W|1|A|U|155
7M4W|1|A|A|156
7M4W|1|A|U|157
*
7M4W|1|A|A|183
7M4W|1|A|G|184
7M4W|1|A|G|185

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34