J5_7M4Y_005
3D structure
- PDB id
- 7M4Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- A. baumannii Ribosome-Eravacycline complex: 70S with E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCG(2MA)(PSU)GU*GUUUAG*CGGUCC
- Length
- 35 nucleotides
- Bulged bases
- 7M4Y|1|A|A|2444, 7M4Y|1|A|U|2445, 7M4Y|1|A|G|2501, 7M4Y|1|A|U|2581, 7M4Y|1|A|U|2605, 7M4Y|1|A|C|2606
- QA status
- Modified nucleotides: 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7M4Y|1|A|G|2053
7M4Y|1|A|A|2054
7M4Y|1|A|A|2055
7M4Y|1|A|A|2056
7M4Y|1|A|G|2057
7M4Y|1|A|A|2058
7M4Y|1|A|C|2059
7M4Y|1|A|C|2060
*
7M4Y|1|A|G|2442
7M4Y|1|A|G|2443
7M4Y|1|A|A|2444
7M4Y|1|A|U|2445
7M4Y|1|A|A|2446
7M4Y|1|A|A|2447
7M4Y|1|A|C|2448
7M4Y|1|A|A|2449
*
7M4Y|1|A|U|2496
7M4Y|1|A|C|2497
7M4Y|1|A|G|2498
7M4Y|1|A|2MA|2499
7M4Y|1|A|PSU|2500
7M4Y|1|A|G|2501
7M4Y|1|A|U|2502
*
7M4Y|1|A|G|2579
7M4Y|1|A|U|2580
7M4Y|1|A|U|2581
7M4Y|1|A|U|2582
7M4Y|1|A|A|2583
7M4Y|1|A|G|2584
*
7M4Y|1|A|C|2602
7M4Y|1|A|G|2603
7M4Y|1|A|G|2604
7M4Y|1|A|U|2605
7M4Y|1|A|C|2606
7M4Y|1|A|C|2607
Current chains
- Chain A
- 23s ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain D
- 50S ribosomal protein L3
- Chain E
- 50S ribosomal protein L4
- Chain K
- 50S ribosomal protein L15
- Chain L
- 50S ribosomal protein L16
- Chain R
- 50S ribosomal protein L22
- Chain Z
- 50S ribosomal protein L32
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