J5_7M5D_001

3D structure

PDB id

7M5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7M5D|1|1|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7M5D_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0894

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7M5D|1|1|C|47
7M5D|1|1|G|48
7M5D|1|1|A|49
7M5D|1|1|U|50
7M5D|1|1|G|51
7M5D|1|1|A|52
7M5D|1|1|A|53
7M5D|1|1|G|54
*
7M5D|1|1|C|116
7M5D|1|1|G|117
7M5D|1|1|A|118
7M5D|1|1|A|119
7M5D|1|1|U|120
7M5D|1|1|G|121
*
7M5D|1|1|C|130
7M5D|1|1|A|131
*
7M5D|1|1|U|148
7M5D|1|1|A|149
7M5D|1|1|U|150
*
7M5D|1|1|A|176
7M5D|1|1|G|177
7M5D|1|1|G|178

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L34