J5_7M5D_007

3D structure

PDB id

7M5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7M5D_007 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.0987

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

7M5D|1|2|C|36
7M5D|1|2|U|37
7M5D|1|2|G|38
7M5D|1|2|G|39
*
7M5D|1|2|C|403
7M5D|1|2|G|404
7M5D|1|2|U|405
7M5D|1|2|G|406
*
7M5D|1|2|C|436
7M5D|1|2|U|437
7M5D|1|2|U|438
7M5D|1|2|U|439
7M5D|1|2|C|440
*
7M5D|1|2|G|497
7M5D|1|2|A|498
7M5D|1|2|A|499
7M5D|1|2|G|500
*
7M5D|1|2|C|545
7M5D|1|2|A|546
7M5D|1|2|A|547
7M5D|1|2|G|548

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 7

Peptide chain release factor 3

Chain i

30S ribosomal protein S4

Chain q

30S ribosomal protein S12