J5_7MD7_014

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

7MD7|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MD7|1|2A|C|601
7MD7|1|2A|G|602
7MD7|1|2A|A|603
7MD7|1|2A|G|604
*
7MD7|1|2A|C|624
7MD7|1|2A|G|625
7MD7|1|2A|U|626
7MD7|1|2A|A|627
7MD7|1|2A|G|628
*
7MD7|1|2A|C|635
7MD7|1|2A|G|636
7MD7|1|2A|A|637
7MD7|1|2A|G|638
*
7MD7|1|2A|C|650
7MD7|1|2A|G|651
7MD7|1|2A|C|652
7MD7|1|2A|A|652|||A
7MD7|1|2A|A|652|||B
7MD7|1|2A|G|652|||C
*
7MD7|1|2A|C|652|||V
7MD7|1|2A|A|653
7MD7|1|2A|A|654
7MD7|1|2A|A|655
7MD7|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15