J5_7MDZ_009

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

7MDZ|1|9|G|126, 7MDZ|1|9|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MDZ|1|9|G|123
7MDZ|1|9|U|124
7MDZ|1|9|C|125
7MDZ|1|9|G|126
7MDZ|1|9|C|127
7MDZ|1|9|U|128
7MDZ|1|9|C|129
*
7MDZ|1|9|G|183
7MDZ|1|9|G|184
7MDZ|1|9|G|185
*
7MDZ|1|9|U|214
7MDZ|1|9|G|215
*
7MDZ|1|9|C|310
7MDZ|1|9|C|311
7MDZ|1|9|G|312
*
7MDZ|1|9|C|337
7MDZ|1|9|G|338
7MDZ|1|9|A|339
7MDZ|1|9|C|340
7MDZ|1|9|C|341

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

40S ribosomal protein S4

Chain GG

eS6

Chain II

eS8