J5_7MDZ_011

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

7MDZ|1|9|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MDZ|1|9|C|30
7MDZ|1|9|U|31
7MDZ|1|9|U|32
7MDZ|1|9|G|33
7MDZ|1|9|U|34
*
7MDZ|1|9|A|521
7MDZ|1|9|A|522
7MDZ|1|9|A|523
7MDZ|1|9|U|524
7MDZ|1|9|A|525
7MDZ|1|9|A|526
7MDZ|1|9|C|527
*
7MDZ|1|9|G|558
7MDZ|1|9|G|559
7MDZ|1|9|A|560
7MDZ|1|9|A|561
7MDZ|1|9|U|562
7MDZ|1|9|G|563
7MDZ|1|9|A|564
7MDZ|1|9|G|565
*
7MDZ|1|9|C|585
7MDZ|1|9|G|586
7MDZ|1|9|A|587
7MDZ|1|9|G|588
7MDZ|1|9|G|589
7MDZ|1|9|A|590
7MDZ|1|9|U|591
7MDZ|1|9|C|592
7MDZ|1|9|C|593
7MDZ|1|9|A|594
7MDZ|1|9|U|595
*
7MDZ|1|9|A|641
7MDZ|1|9|U|642
7MDZ|1|9|A|643
7MDZ|1|9|G|644

Current chains

Chain 9

18S rRNA

Nearby chains

Chain JJ

uS4

Chain XX

uS12

Chain ee

eS30